2019-ics-malariafreek/year2.py

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Python
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2019-03-07 13:56:08 +00:00
#!/usr/bin/env python3
import random
import time
from matplotlib import pyplot
HUMAN_DEAD = 0
HUMAN_HEALTHY = 1
HUMAN_INFECTED = 2
HUMAN_IMMUNE = 3
MOSQ_POSITION = 0
MOSQ_INFECTED = 1
MOSQ_HUNGRY = 2
class Model:
def __init__(self, width=32, height=32, humandens=0.15, mosquitodens=0.10,
immumepct=0.1, mosqinfpct=0.1, hm_infpct=0.5, mh_infpct=0.5,
hinfdiepct=0.01, mhungrypct=0.1, humandiepct=10**-6,
mosqdiepct=10**-3, mosqnetdens=0.05):
self.width = width
self.height = height
# The initial density of humans
self.humandens = humandens
# The initial density mosquitos
self.mosquitodens = mosquitodens
# The chance that a human is immune
self.immumepct = immumepct
# The chance that a mosquito is born infected
self.mosqinfpct = mosqinfpct
# The chance that a human infects a mosquito
self.hm_infpct = hm_infpct
# The chance that a mosquito infects a human
self.mh_infpct = mh_infpct
# The chance that a mosquito gets hungry
self.mhungrypct = mhungrypct
# The chance that an infected human dies
self.hinfdiepct = hinfdiepct
# The chance that an uninfected/immume human dies
self.humandiepct = humandiepct
# The chance that a mosquito dies
self.mosqdiepct = mosqdiepct
# The density of mosquito nets
self.mosqnetdens = mosqnetdens
maxhumans = round(self.humandens * self.width * self.height)
maxmosquitos = round(self.mosquitodens * self.width * self.height)
maxmosqnets = round(self.mosqnetdens * self.width * self.height)
# Human: 0=dead, 1=healthy, 2=infected, 3=immume
# Mosquito: [(x, y), infected, hungry]
self.humans = [[HUMAN_DEAD for _ in range(width)]
for _ in range(height)]
self.mosquitos = []
self.mosqnets = [[False]*width for _ in range(height)]
for _ in range(maxhumans):
self.addhuman()
for _ in range(maxmosquitos):
self.addmosquito(random.uniform(0, 1) < mosqinfpct)
for _ in range(maxmosqnets):
self.addmosqnet()
def addhuman(self):
x, y = random.choice([(x, y)
for x in range(self.width) for y in range(self.height)
if self.humans[y][x] == HUMAN_DEAD])
if random.uniform(0, 1) < self.immumepct:
self.humans[y][x] = HUMAN_IMMUNE
else:
self.humans[y][x] = HUMAN_HEALTHY
def addmosquito(self, infected=False):
height = len(self.humans)
width = len(self.humans[0])
self.mosquitos.append([(random.randint(0, width-1),
random.randint(0, height-1)), infected, False])
def addmosqnet(self):
x, y = random.choice([(x, y)
for x in range(self.width) for y in range(self.height)
if self.mosqnets[y][x] == False])
self.mosqnets[y][x] = True
def move(self, pos):
x, y = pos
possibs = [(x, y) for x, y
in [(x-1, y), (x, y-1), (x+1, y), (x, y+1)]
if x > -1 and x < self.width
and y > -1 and y < self.height
and not self.mosqnets[y][x]]
try:
return random.choice(possibs)
except IndexError:
return (x, y)
def getstates(self):
humanhealthy = sum(1 for row in self.humans for human in row if human == HUMAN_HEALTHY)
humaninfected = sum(1 for row in self.humans for human in row if human == HUMAN_INFECTED)
humanimmune = sum(1 for row in self.humans for human in row if human == HUMAN_IMMUNE)
mosqinfected = sum(1 for mosq in self.mosquitos if mosq[MOSQ_INFECTED])
mosqhungry = sum(1 for mosq in self.mosquitos if mosq[MOSQ_HUNGRY])
return humanhealthy, humaninfected, humanimmune, mosqinfected, mosqhungry
def step(self):
# Copy the human values
humans = [human_row[:] for human_row in self.humans]
# Now I am become death, the destroyer of worlds
killed = 0
for human_row in humans:
for i, human in enumerate(human_row):
if human == HUMAN_INFECTED \
and random.uniform(0, 1) < self.hinfdiepct:
human_row[i] = HUMAN_DEAD
killed += 1
elif human != HUMAN_DEAD \
and random.uniform(0, 1) < self.humandiepct:
human_row[i] = HUMAN_DEAD
killed += 1
mosqkilled = 0
mosquitos = []
for pos, infected, hungry in self.mosquitos:
# Randomly move the mosquito to a new position
(x, y) = self.move(pos)
if hungry and self.humans[y][x]:
# If a mosquito is hungry and in the same cell as a mosquito,
# human, it'll bite
hungry = False
human = self.humans[y][x]
if human == HUMAN_INFECTED:
# If the human is infected, become infected
infected = random.uniform(0, 1) < self.hm_infpct
if infected and human == HUMAN_HEALTHY and \
random.uniform(0, 1) < self.mh_infpct:
# If the human is healthy and not immune, there's a
# mh_infpct chance it will become infected.
humans[y][x] = HUMAN_INFECTED
elif not hungry:
# If the mosquito is not hungry, there's a mhungrypct
# chance it'll become hungry
hungry = random.uniform(0, 1) < self.mhungrypct
# There's a mosqdiepct% chance that a mosq will die
if random.uniform(0, 1) < self.mosqdiepct:
mosqkilled += 1
else:
mosquitos.append(((x, y), infected, hungry))
# Send all new values to the model
self.mosquitos = mosquitos
self.humans = humans
for _ in range(killed):
# Add a human for each one that had died
self.addhuman()
for _ in range(mosqkilled):
# Add a mosqito for each one that had died
self.addmosquito()
@staticmethod
def drawhuman(human):
if human == HUMAN_DEAD:
return (31, 31, 31)
elif human == HUMAN_HEALTHY:
return (0, 127, 0)
elif human == HUMAN_INFECTED:
return (255, 0, 0)
elif human == HUMAN_IMMUNE:
return (0, 255, 0)
@staticmethod
def drawmosq(mosq):
_, hungry, infected = mosq
if hungry and infected:
return (255, 61, 0)
elif hungry: # and not infected
return 191, 128, 0
elif infected: # and not hungry
return (127, 0, 0)
else: # neither
return (0, 0, 223)
def printlegend(self):
print('Humans (large blocks): ', end='')
print('\033[38;2;%i;%i;%imDead\033[0m' %
self.drawhuman(HUMAN_DEAD), end=', ')
print('\033[38;2;%i;%i;%imHealthy\033[0m' %
self.drawhuman(HUMAN_HEALTHY), end=', ')
print('\033[38;2;%i;%i;%imInfected\033[0m' %
self.drawhuman(HUMAN_INFECTED), end=', ')
print('\033[38;2;%i;%i;%imImmune\033[0m' %
self.drawhuman(HUMAN_IMMUNE))
print('Mosquitos (small blocks): ', end='')
print('\033[38;2;%i;%i;%imHungry and Infected\033[0m' %
self.drawmosq(((0, 0), True, True)), end=', ')
print('\033[38;2;%i;%i;%imHungry\033[0m' %
self.drawmosq(((0, 0), True, False)), end=', ')
print('\033[38;2;%i;%i;%imInfected\033[0m' %
self.drawmosq(((0, 0), False, True)), end=', ')
print('\033[38;2;%i;%i;%imNeither\033[0m' %
self.drawmosq(((0, 0), False, False)))
print('Mosquito nets: /\\')
def print(self):
data = [[self.drawhuman(human) for human in row]
for row in self.humans]
# Draw the mosquitos
mosqs = [[None] * self.width for _ in range(self.height)]
for mosq in self.mosquitos:
x, y = mosq[0]
mosqs[y][x] = self.drawmosq(mosq)
print('\033[2J\033[0;0H' + '\033[0m\n'.join(''.join([
'\033[48;2;%i;%i;%im' % data[row][x] +
('\033[38;2;%i;%i;%im\u2590\u258c' % mosqs[row][x] if mosqs[row][x]
else '\033[38;2;255;255;255m/\\' if self.mosqnets[row][x]
else ' ')
for x in range(self.width)])
for row in range(0, self.height)) + '\033[0m')
self.printlegend()
def gui(self, printsteps=1):
try:
fps = 15
while True:
prevtime = time.time()
for _ in range(printsteps):
self.step()
self.print()
time.sleep(max(0, (1/fps) - (time.time()-prevtime)))
except KeyboardInterrupt:
return
def frange(start, end, steps):
stepsize = (end - start) / (steps-1)
for n in range(steps):
yield start + stepsize * n
def statesvstime(tmax=40000):
model = Model(64, 64)
tr = list(range(tmax))
results = [None]*tmax
for t in tr:
print(t/tmax, end='\r')
model.step()
results[t] = model.getstates()
humanhealthy, humaninfected, humanimmune, mosqinfected, mosqhungry = zip(*results)
pyplot.plot(tr, humanhealthy, label='Healthy humans')
pyplot.plot(tr, humaninfected, label='Infected humans')
pyplot.plot(tr, humanimmune, label='Immune humans')
pyplot.plot(tr, mosqinfected, label='Infected mosquitos')
pyplot.plot(tr, mosqhungry, label='Hungry Mosquitos')
pyplot.legend()
pyplot.xlabel('time (steps)')
pyplot.ylabel('amount')
pyplot.show()
def netvsimmune(tmin=10000, denscnt=200):
dr = list(frange(0, 1, denscnt))
results = [None]*denscnt
for i, dens in enumerate(dr):
print(dens, end='\r')
model = Model(16, 16, mosqnetdens=dens)
for t in range(tmin):
model.step()
results[i] = sum(1 for row in model.humans for human in row if human == HUMAN_IMMUNE)
pyplot.plot(dr, results, label='Immunity')
pyplot.legend()
pyplot.xlabel('Mosquito net density')
pyplot.ylabel('Immune humans')
pyplot.show()
def main():
model = Model()
model.gui()
statesvstime()
netvsimmune()
if __name__ == '__main__':
random.seed()
main()